SNP Profiles of RB 37   View Data

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 Key

 1234567891011121314
_Input profile
GGAACCGGTTGGAACCAAGGAGCCCCGG
1._GC-01-043-2-20
GGAACCGGTTGGAACCAAGGAGCCCCGG
2._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
3._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
4._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
5._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
6._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
7._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
8._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
9._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
10._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
11._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
12._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
13._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
14._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
15._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
16._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
17._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
18._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
19._RB_37_[BRA]
GGAACCGGTTGGAATTAAGGAGCCCCGG
20._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
21._GC-01-043-2-20
GGAACCGGTTGGAATTAAGGAGCCCCGG
22._RUQ_1705
__AC___AA____AA__
23._RB_37_[BRA]
GGAAACGG__AACTAA_AAACCCGG
24._RB_37_[BRA]
GGAAACGGCC_AACTAAGG_ACCC_
25._RUQ_135
GGAAACGGCCGGAACTAAGGAAACCCGG
26._GC-01-43-2-20
GGAACCCCAACCAAAAAAGG_CC_CC
27._GC-01-43-2-20
GGAACCCCAACCAAAAAAGG_CC_CC
 1516171819202122232425262728
_Input profile
GGACCCAAGGGGTTTTGGAACCAACCGG
1._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
2._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
3._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
4._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
5._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
6._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
7._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
8._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
9._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
10._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
11._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
12._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
13._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
14._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
15._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
16._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
17._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
18._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
19._RB_37_[BRA]
GGACCCAAGGGGTTTTGGAACCAACCGG
20._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
21._GC-01-043-2-20
GGACCCAAGGGGTTTTGGAACCAACCGG
22._RUQ_1705
GGCC_AAGGGG_____AA_GG
23._RB_37_[BRA]
GGCCCCAAGGGGTTCTCGAACCAACTGG
24._RB_37_[BRA]
GGCCCCAAGGGGTTCTCGAACCAACTGG
25._RUQ_135
GGCCCCAAGGGGCTCTCGAACCAACTGG
26._GC-01-43-2-20
CGACGG_CCCCAAAAGGAAGGAAGGGG
27._GC-01-43-2-20
CGACGG_CCCCAAAAGGAAGGAAGGGG
 2930313233343536373839   
_Input profile
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
1._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
2._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
3._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
4._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
5._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
6._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
7._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
8._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
9._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
10._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
11._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
12._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
13._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
14._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
15._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
16._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
17._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
18._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
19._RB_37_[BRA]
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
20._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
21._GC-01-043-2-20
AATTCTGGTTAACTCCCCAACCX_XX_XX_X
22._RUQ_1705
_TT_GG____CC__X_XX_XX_X
23._RB_37_[BRA]
AA_TTGGTTAACCCTCCAACCX_XX_XX_X
24._RB_37_[BRA]
AA_TTGGTTAACCCCCCAA_X_XX_XX_X
25._RUQ_135
AACTCTGGTTAACCCCCCAGCCX_XX_XX_X
26._GC-01-43-2-20
AA__CCAAAAAGGGGGAAGGX_XX_XX_X
27._GC-01-43-2-20
AA__CCAA_AGGGGGAAGGX_XX_XX_X

Input profile: RB_37_[BRA]

 
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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

1._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

3._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

11._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

12._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

13._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

14._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

15._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

16._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

17._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

18._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

19._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

21._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

22._RB_37_[BRA] RUQ_1705

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._RB_37_[BRA]

84.3 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

24._RB_37_[BRA]

83.8 %
34 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

25._RB_37_[BRA] RUQ_135

82.1 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._RB_37_[BRA] GC-01-43-2-20

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

43.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520